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RNA-Protein EMSA Assay Kits

Clean Visual Validation of RNA-Protein Interactions

RNA-binding proteins (RBPs) are essential regulators of gene expression, controlling mRNA splicing, stability, and non-coding RNA processing (miRNAs/lncRNAs). Dysregulation of these pathways drives numerous diseases, making RBP validation vital for functional genomics and target discovery.

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The Electrophoretic Mobility Shift Assay (EMSA) is the gold standard for verifying direct RBP-RNA interactions. Running complexes on a native gel provides clear visual validation of binding specificity, affinity, and multi-protein assembly.

Principle 

The assay is based on the fact that RNA-protein complexes migrate more slowly through a non-denaturing polyacrylamide gel than free RNA probes.

  1. Binding Reaction: A biotin-labeled RNA probe is incubated with a purified protein or nuclear/cytoplasmic extract.

  2. Electrophoresis: The mixture is resolved on a native gel. Free probes migrate quickly to the bottom, while bound RNA-protein complexes are retarded ("shifted") higher in the gel.

  3. Detection: The gel is transferred to a membrane and visualized using an optimized, ultra-sensitive chemiluminescent substrate.

  4. Specificity Control: Specificity is confirmed by adding an excess of unlabeled ("cold") competitor probe, which prevents the formation of the shifted biotin-labeled complex.

Benefits

Universal  Compatibility

Validated for human, mouse, rat, and all other mammalian samples—ideal for translational research.

Safe, Non-Radioactive

Matches traditional radioactive sensitivity while eliminating regulatory burdens, hazards, and disposal costs.

Pre-Validated

Probe Pairs

Includes a biotin-labeled "hot" probe and an unlabeled "cold" competitor, enabling immediate specificity controls without oligo design.

Comprehensive Insights

Easily characterize binding dynamics, measure competition, and visualize multi-protein supershifts.

Ultra-Sensitive Chemiluminescence

Combining an optimized workflow with a highly sensitive substrate ensures clear detection of low-abundance RBPs and weak interactions.

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